AntPack Open Source (pre v0.3.9)

Tools for numbering, sequence analysis and statistical modeling / ML for antibodies and TCRs, using amino acid sequences, with some limited support for DNA sequences.

• Installation
• Licensing

Using AntPack from Python, the command line or as a GUI

• AntPack command line, Python and GUI tools
• Using the GUI: a tutorial

Antibody Numbering

• How antibody numbering in AntPack works
• Antibody numbering
• Using DNA sequences
• Numbering example

Assigning V and J genes

• VJ gene assignment tutorial
• VJ gene assignment example

Finding developability liabilities

• Finding liabilities

Humannness scoring, generative modeling and humanization

• How humanness evaluation in AntPack works
• Humanness evaluation
• Generating new human sequences
• Humanizing sequences
• Scoring and clustering examples

Miscellaneous

• About / Contact

• Search Page